Moving from Association Studies and Genome-wide Scans for Selection towards Genomic Selection (GS) in R

Dates

21-25 May 2018

 

topic

  •          Quantitative Genetics
  •          QTL mapping and Association Studies
  •         Genome-Wide Scans for Selection / Genotype-by-Environment (GxE) Interaction
  •         Breeding Values and Genomic Prediction

Goals

  •         Understand the utility of genome-wide scans for selection and association studies to improve genomic prediction models
  •          Learn how to detect and measure genotype-by-environment (GxE) interaction
  •        Introduce the basic concepts of genomic selection and its applications
  •          Illustrate the implementation of various models for genomic prediction in R
  •      Learn how to validate genomic prediction models
  •          Discuss some examples on the usefulness of genomic selection

Requirements

 

Bring your own laptop with the following programs installed:

 

 

  1. Last version of R: https://www.r-project.org/
  2. Last version of the package BGLR: https://cran.r-project.org/web/packages/BGLR/index.html
  3. Last version of Tassel: http://www.maizegenetics.net/tassel
  4. Last version of Java SE runtime environment (64 bits): http://www.oracle.com/technetwork/java/javase/downloads/index.html

WHERE

Botanisches Museum, Königin-Luise-Straße 6-8, Berlin

program

 

 

Day 1. Basics in population genetics and quantitative genetics (linkage and linkage disequilibrium, co-ancestry, breeding values), breeder’s equation.

 

 

Day 2. Basics in QTL mapping, design and analyses of multienvironment trials, methods for estimating genotype-by-environment (GxE) interaction.

 

 

Day 3. Basics in genome-wide scan for selection and association studies.

 

 

Day 4. Phenotypic and genotypic variances, covariance between relatives, basic genetic models, methods for estimating and predicting breeding values.

 

 

Day 5. Complexity of genomic prediction, methods for genomic prediction coupled with GWAS and some empirical results.

 


Instructors

 

Dr. Matthew W. Blair

 

 

 

Cost overview

 

Package 1

COURSE + REFRESHMENTS

 

Package 2

Course material, refreshments, lunch and accommodation

          480 € (VAT included)

      795 € (VAT included)


Please click HERE to get all the information about our packages.

Application deadline is: April 20th, 2018.

 

Cancellation Policy:

 

> 30  days before the start date = 30% cancellation fee

< 30 days before the start date= No Refund.

 

Physalia-courses cannot be held responsible for any travel fees, accommodation or other expenses incurred to you as a result of the cancellation.