Genomic Data Visualisation with R
Dates
18-20 November 2024
To foster international participation, this course will be held online
Course overview
This course aims to familiarize participants with the most essential graphs in the field of genomics, primarily using the R programming language. We will start with graphs related to expression studies, such as volcano plots, peak profiling, and Gene Ontology. Then, we'll move on to genomic studies and explore genome statistics plots, including genome coverage, metagenomics bar plots, and time series of allele frequencies over time. On the last day, we'll focus on plots related to comparative genomics studies, such as phylogenetic trees, Venn diagrams, ideograms, and synteny plots.
Target audience and assumed background
Participants are expected to have familiarity with the R language, and a short introduction to R will be provided beforehand.
Session content
Monday– Classes from 2-8 PM Berlin time
- Volcano plots
- Dimension redunction plots (PCA, t-SNE, ..)
- Peak visualisation
-Pathway and annotation plots
-Heatmaps, Waffle plots, Waterfall plots
Tuesday– Classes from 2-8 PM Berlin time
- Stacked bar plots
- Time series plots
- Multiple alignments visualisation
- Manhattan plots
-Genome stats plots (genome coverage, gene graphs, ..)
Wednesday– Classes from 2-8 PM Berlin time
-Phylogenetic trees
-Circus plots
- Venn diagrams and UpSet plots
- Synteny plots
- Ideograms
- Pangenome graphs
COst overview
Cancellation Policy:
> 30 days before the start date = 30% cancellation fee
< 30 days before the start date= No Refund.
Physalia-courses cannot be held responsible for any travel fees, accommodation or other expenses incurred to you as a result of the cancellation.