Introduction to genome-wide association studies (GWAS)


Quebec City, 9-13 September 2019

General Topic: Bioinformatics pipeline for GWAS analysis



Institut de Biologie Intégrative et des Systèmes (IBIS)
Pavillon Charles-Eugène-Marchand
1030, Avenue de la Médecine
Room 1210 (Hydro-Québec Room)
Université Laval
Québec (Québec) G1V 0A6


This course will introduce students, researchers and professionals to the steps needed to build an analysis pipeline for Genome-Wide Association Studies (GWAS). The course will, on one hand, describe all the necessary steps involved in a typical GWAS study; on the other hand, we will build a reusable and reproducible GWAS pipeline.


The course is structured in modules over five days. Each day will include introductory lectures with class discussions of key concepts. The remainder of each day will consist of practical hands-on sessions. These sessions will involve a combination of both mirroring exercises with the instructor to demonstrate a skill as well as applying these skills on your own to complete individual exercises. After and during each exercise, results will be interpreted and discussed in group.


The course is aimed at students, researchers and professionals interested in learning how to build a structured pipeline for semi-automated and reproducibile GWAS analyses. It will include information useful for both beginners and more advanced users. We will start by introducing general concepts of GWAS and bioinformatics pipeline building, progressively describing all steps and putting there seamlessy together in a general workflow. Attendees should have a background in biology, specifically genetics; previous exposure to GWAS experiments would also be beneficial.




  • Understanding the different steps involved in a typical GWAS analysis and how to build them together in a general workflow / bioinformatics pipeline


 Monday- 09:00- 17:00



General Introduction / Overview



Introduction to GWAS: theory, examples, applications



Introduction to bioinformatics pipelines



Step 1: data retrieval and preparation


Step 2: data cleaning and filtering


Step 3: data description


Step 4: imputation of missing genotypes




Dr. Filippo Biscarini



COst overview

Package 1





IBIS & RAQ members



580 € (approx. $916.51 CAD)

suggested hotel

Hotel Universel Quebec

2300, Chemin Sainte-Foy
Québec, QC G1V 1S5


Cancellation Policy:




> 30  days before the start date = 30% cancellation fee


< 30 days before the start date= No Refund.




Physalia-courses cannot be held responsible for any travel fees, accommodation or other expenses incurred to you as a result of the cancellation.