Genomic Data Visualisation with R

Dates

18-20 November 2024

To foster international participation, this course will be held online

 

Course overview

This course aims to familiarize participants with the most essential graphs in the field of genomics, primarily using the R programming language. We will start with graphs related to expression studies, such as volcano plots, peak profiling, and Gene Ontology. Then, we'll move on to genomic studies and explore genome statistics plots, including genome coverage, metagenomics bar plots, and time series of allele frequencies over time. On the last day, we'll focus on plots related to comparative genomics studies, such as phylogenetic trees, Venn diagrams, ideograms, and synteny plots.

Target audience and assumed background

Participants are expected to have familiarity with the R language, and a short introduction to R will be provided beforehand.

Session content

Monday– Classes from 12-6 PM Berlin time

- Volcano plots

- Dimension redunction plots (PCA, t-SNE, ..)

- Peak visualisation

-Pathway and annotation plots

-Heatmaps, Waffle plots, Waterfall plots


Tuesday
– Classes from 12-6 PM Berlin time

- Stacked bar plots

- Time series plots

- Multiple alignments visualisation

- Manhattan plots

-Genome stats plots (genome coverage, gene graphs, ..)



Wednesday
– Classes from 12-6 PM Berlin time

 

-Phylogenetic trees

-Circus plots

- Venn diagrams and UpSet plots

- Synteny plots

- Ideograms

- Pangenome graphs

 

Instructor

 

Dr Loukas Theodosiou

 

 

 

 

 

 


COst overview

 

Package 1

 

 

 

420 €

 

 

 

 

 

 

 

 

 


Cancellation Policy:

 

> 30  days before the start date = 30% cancellation fee

< 30 days before the start date= No Refund.

 

Physalia-courses cannot be held responsible for any travel fees, accommodation or other expenses incurred to you as a result of the cancellation.