Brian J. Haas
Klarman Cell Observatory, Broad Institute, 415 Main Street, Cambridge, MA 02142
bhaas@broadinstitute.org

 

 

Professional Preparation

Senior Computational Biologist, The Broad Institute of MIT & Harvard, 2009-present


Computational Biologist, The Broad Institute of MIT & Harvard, 2007-2009


Bioinformatics Analyst & Engineer, The Institute for Genomic Research, 1999-2007

MSc in Computer Science, New York, 2005

MSc in Molecular Biology, State University of Albany, New York, 1999

BSc in Biology, State University of Albany, New York, 1995



Selected Publications

Haas BJ*, Papanicolaou A*, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, Macmanes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, Leduc RD, Friedman N, Regev A (2013) De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc. 2013

Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection Bioinformatics.

Brian J. Haas and Michael C. Zody (2010) Advancing RNA-Seq analysi. Nature Biotechnology 28, 421-423

Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White OR, Buell CR, Wortman JR (2008) Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biol. 2008 Jan 11;9(1):R7

Haas, B.J., Delcher, A.L., Wortman, J.R. and Salzberg, S.L. (2004) DAGchainer: A tool for mining segmental genome duplications and synteny. Bioinformatics. 2004, vol 20, issue 18


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