Professional Preparation

 

 

Post-doctoral research stay, School of Public Health, City University of New York, USA. Jun 2017-Present

 

 

 

Post-doctoral research stay, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Brazil. Oct 2016-Apr 2017

 

 

 

PhD, University of Munich, Germany and University of Moscow, Russia. 2011-2016

 

 

 

Dipl.-Bioinf. (M.Sc. Equiv.), University of Munich, Germany. Study of Bioinformatics. 2004-2010

 

 

 

Selected Publications

 

Amezquita RA, Lun ATL, Becht E, Carey VJ, Carpp LN, Geistlinger L, Marini F, Rue-Albrecht K, Risso D, Soneson C, Waldron L, Pagès H, Smith ML, Huber W, Morgan M, Gottardo R, Hicks SC. Orchestrating single-cell analysis with Bioconductor. Nature Methods, 2019.

 

 

 

Wang Z, Ding G, Geistlinger L, Li H, Liu L, Zeng R, Tateno Y, Li Y. Evolution of protein phosphorylation for distinct functional modules in vertebrate genomes. Molecular Biology and Evolution, 2011.

 

 

 

Geistlinger L, Csaba G, Dirmeier S, Küffner R, Zimmer R. A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae. Nucleic Acids Research, 2013.

 

 

 

Chen GM, Kannan L, Geistlinger L, Kofia V, Safikhani Z, Gendoo DMA, Parmigiani G, Birrer M, Haibe-Kains B, Waldron L. Consensus on molecular subtypes of high-grade serous ovarian carcinoma. Clinical Cancer Research, 2018.

 

 

 

Geistlinger L, Csaba G, Santarelli M, Ramos M, Schiffer L, Law C, Turaga N, Davis S, Carey V, Morgan M, Zimmer R, Waldron L. Towards a gold standard for benchmarking gene set enrichment analysis. Briefings in Bioinformatics, 2020.

 

 

 

Gieger C, Geistlinger L, Altmaier E, Hrabe de Angelis M, Kronenberg F, Meitinger T, Mewes HW, Wichmann HE, Weinberger KM, Adamski J, Illig T, Suhre K. Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum. PLoS Genetics, 2008.

 

 

 

Geistlinger L, Csaba G, Küffner R, Mulder N, Zimmer R. From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems. Bioinformatics, 2011.

 

 

 

da Silva V, Ramos M, Groenen M, Crooijmans R, Johansson A, Regitano L, Coutinho L, Zimmer R, Waldron L, Geistlinger L. CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes. Bioinformatics, 2019.

 

 

 

Geistlinger L, da Silva VH, Cesar ASM, Tizioto PC, Waldron L, Zimmer R, Regitano LCA, Coutinho LL. Widespread modulation of gene expression by copy number variation in skeletal muscle. Scientific Reports, 2018.

 

 

 

Geistlinger L, Csaba G, Zimmer R. Bioconductor's EnrichmentBrowser: seamless navigation through combined results of set- \& network-based enrichment analysis. BMC Bioinformatics, 2016.